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Carbotrace

Carbotrace are optotracers for anatomical mapping of carbohydrate structures in plants and for non-destructive composition analysis of glucans in bio-based materials and biofuels.

The optotracing technology entails the use of structure-responsive fluorescent molecules (optotracers) which become fluorescent when binding to a target. The excitation and emission spectra of the optotracer molecule contain information on the structure of their binding partner and their environment. This spectral fingerprint can be used to identify biomolecules in various types of materials.

Carbotrace is available in five variants which bind to repetitive motifs in proteins and carbohydrates. It has been shown that Carbotrace 680 binds to homoglucans and heteroglucans with a limited degree of branching. By using the spectral fingerprint from the excitation- and emission spectra, it was shown that the optotracer can differentiate between different types of glycosidic bonds. Using Multi-laser/Multi-detector imaging, non-destructive composition analysis of biomass has been performed such as differentiation of cellulose cell walls and starch granules in fresh potato as well as cellulose and lignin in in various types of biomass. Using fluorescence lifetime imaging in combination with Carbotrace 680, the mechanism of paper ageing was analysed. Further, Carbotrace 680 was used to visualise cellulose content in terrestrial plants (maize root and ulvophyceae) as well as algae and to characterise a cellulose immobilisation matrix in a microfluidic device. Carbotrace 480 was used as a tool for cellulose visualisation and to optimise cellulose extraction from macroalgae.

Carbotrace variant work in a wide range of salt and pH conditions. When the pH is altered during the experiment, pH controls should be included. Carotrace can be used with fluorescence plate readers, fluorescence microscopes and confocal laser scanning microscopes and fluorescence life time imaging.

Store your Carbotracer product in the fridge and use the opened container within 12 months. Carbotrace is for research use only and is not for resale.

Carbotrace Testing Service

Carbotrace Testing Service

Are your interested in composition analysis using Carbotrace, but lack necessary equipment or expertise?

With our Carbotrace Testing Service, we can help you get started!

If you send us your material, we will be able to label your sample with a Carbotrace variant of your choice and acquire data using our protocols and in-house equipment. As a result, you will receive a report including some processed data and all the raw data. Samples are able to be sent back or destroyed upon request when the project is completed.

Please click on the button to fill out an inquiry form.

If you fill out all fields, we will be able to get back to you with a detailed quote for a Carbotrace Testing Service tailored to your needs. If you only fill out your name and email, we will be happy to get in touch to discuss the best way forward.

Fill out Carbotrace Testing Service Request
Carbotrace Mix&Try

Carbotrace Mix&Try is our recommended option for starting out with using Carbotrace. It contains 10 µL of each variant. Testing each variant will allow you to determine which variant is best suited for your experiments and available instruments.

All Carbotrace variants label repetitive motifs in proteins and carbohydrates. Generally, Carbotrace labeling is strongest with protein aggregates. Homoglucans like cellulose are labeled reliably, albeit with lower quantum yield. Heteroglucans with low degree of branching like starches are labeled and can be distingiushed by their spectral fingerpint. Labelling of hemicelluloses is weak or absent.

Carbotrace 480 has been used to optimize a sustainable extraction method for cellulose hydrogels derived from microalgae and Carbotrace 680 has been used to image cellulose and starch components in plant cells and differentiate between those components using multi-laser/multi-detector analysis with confocal microscopy. Using a fluorescence spectrophotometer to acquire excitation and emission spectra, a unique spectral signature allows to differentiate between α(1-3), α(1-4), α(1-6), β(1-3), β(1-4) and β(1-6) linked glucans. As such, Carbotrace 680 labels cell wall components such as Cellulose, Chitin, Laminarin and the hemicellulose xyloglucan. Further, Carbotrace 680 has been used to determine relative carbohydrate content and elasticity of cell walls in plant material. Contact us to learn more about applications for Carbotrace.

Table: Excitation- and emission wavelengths as well as recommended filter sets.
Exmax Emmax Recommended filter-sets
Carbotrace 480 420 nm 480 nm DAPI
Carbotrace 520 460 nm 520 nm FITC, GFP
Carbotrace 540 480 nm 540 nm FITC, GFP, YFP
Carbotrace 630 520 nm 630 nm PI, Cy3, TxRed, mCherry, Cy3.5
Carbotrace 680 530 nm 680 nm PI, mCherry, Cy3.5
contact us for custom options.
Carbotrace 480

Carbotrace 480 is our blue optotracer for labeling repetitive motifs in proteins and carbohydrates. Generally, Carbotrace labeling is strongest with protein aggregates. Homoglucans like cellulose are labeled reliably, albeit with lower quantum yield. Heteroglucans with low degree of branching like starches are labeled and can be distingiushed by their spectral fingerpint. Generally labelling of hemicelluloses is weak or absent.

Specifically, Carbotrace 480 has been used to optimize a sustainable extraction method for cellulose hydrogels derived from microalgae. Contact us to learn more about applications for Carbotrace 480.

Table: Excitation- and emission wavelengths as well as recommended filter sets.
Exmax Emmax Recommended filter-sets
Carbotrace 480 420 nm 480 nm DAPI

Carbotrace 480 is available as 1 mg/ml solution in ultrapure water (Aqueous) with volumes ranging from 10 - 200 µL (See volumes and prices in the drop-down list below). The product should be diluted 1:1000 before use. To prevent evaporation of the aqueous solvent, close the container carefully after use, spin down liquid and use up small volumes quickly.

contact us for custom options.
Carbotrace 520

Carbotrace 520 is our green optotracer for labeling repetitive motifs in proteins and carbohydrates. Generally, Carbotrace labeling is strongest with protein aggregates. Homoglucans like cellulose are labeled reliably, albeit with lower quantum yield. Heteroglucans with low degree of branching like starches are labeled and can be distingiushed by their spectral fingerpint. Generally labelling of hemicelluloses is weak or absent. Contact us to learn more about applications for Carbotrace 520.

Table: Excitation- and emission wavelengths as well as recommended filter sets.
Exmax Emmax Recommended filter-sets
Carbotrace 520 460 nm 520 nm FITC, GFP

Carbotrace 520 is available as 1 mg/ml solution in ultrapure water (Aqueous) with volumes ranging from 10 - 200 µL (See volumes and prices in the drop-down list below). The product should be diluted 1:1000 before use. To prevent evaporation of the aqueous solvent, close the container carefully after use, spin down liquid and use up small volumes quickly.

contact us for custom options.
Carbotrace 540

Carbotrace 540 is our yellow optotracer for labeling repetitive motifs in proteins and carbohydrates. Generally, Carbotrace labeling is strongest with protein aggregates. Homoglucans like cellulose are labeled reliably, albeit with lower quantum yield. Heteroglucans with low degree of branching like starches are labeled and can be distingiushed by their spectral fingerpint. Generally labelling of hemicelluloses is weak or absent.

Specifically, Carbotrace 540 has been used to determine the purity of cellulose extracted from macroalgae by allowing analysis of extracted carbohydrates in their polymeric state. In addition, Carbotrace 540 has shown to bind to the hemicellulose xyloglucan. Contact us to learn more about applications for Carbotrace 540.

Table: Excitation- and emission wavelengths as well as recommended filter sets.
Exmax Emmax Recommended filter-sets
Carbotrace 540 480 nm 540 nm FITC, GFP, YFP

Carbotrace 540 is available as 1 mg/ml solution in ultrapure water (Aqueous) with volumes ranging from 10 - 200 µL (See volumes and prices in the drop-down list below). The product should be diluted 1:1000 before use. To prevent evaporation of the aqueous solvent, close the container carefully after use, spin down liquid and use up small volumes quickly.

contact us for custom options.
Carbotrace 630

Carbotrace 630 is our orange optotracer for labeling repetitive motifs in proteins and carbohydrates. Generally, Carbotrace labeling is strongest with protein aggregates. Homoglucans like cellulose are labeled reliably, albeit with lower quantum yield. Heteroglucans with low degree of branching like starches are labeled and can be distingiushed by their spectral fingerpint. Generally labelling of hemicelluloses is weak or absent. Contact us to learn more about applications for Carbotrace 630.

Table: Excitation- and emission wavelengths as well as recommended filter sets.
Exmax Emmax Recommended filter-sets
Carbotrace 630 520 nm 630 nm PI, Cy3, TxRed, mCherry, Cy3.5

Carbotrace 630 is available as 1 mg/ml solution in ultrapure water (Aqueous) with volumes ranging from 10 - 200 µL (See volumes and prices in the drop-down list below). The product should be diluted 1:1000 before use. To prevent evaporation of the aqueous solvent, close the container carefully after use, spin down liquid and use up small volumes quickly.

contact us for custom options.
Carbotrace 680

Carbotrace 680 is our red optotracer for labeling repetitive motifs in proteins and carbohydrates. Generally, Carbotrace labeling is strongest with protein aggregates. Homoglucans like cellulose are labeled reliably, albeit with lower quantum yield. Heteroglucans with low degree of branching like starches are labeled and can be distingiushed by their spectral fingerpint. Generally labelling of hemicelluloses is weak or absent.

Specifically, Carbotrace 680 has been used to image cellulose and starch components in plant cells and differentiate between those components using multi-laser/multi-detector analysis with confocal microscopy. Using a fluorescence spectrophotometer to acquire excitation and emission spectra, a unique spectral signature allows to differentiate between α(1-3), α(1-4), α(1-6), β(1-3), β(1-4) and β(1-6) linked glucans. As such, Carbotrace 680 labels cell wall components such as Cellulose, Chitin, Laminarin and the hemicellulose xyloglucan. Further, Carbotrace 680 has been used to determine relative carbohydrate content and elasticity of cell walls in plant material. Contact us to learn more about applications for Carbotrace 680.

Table: Excitation- and emission wavelengths as well as recommended filter sets.
Exmax Emmax Recommended filter-sets
Carbotrace 680 530 nm 680 nm PI, mCherry, Cy3.5

Carbotrace 680 is available in four different formulations (See volumes and prices in the drop-down list below): 

  • Aqueous: 1 mg/ml solution in ultrapure water. The product should be diluted 1:1000 before use. To prevent evaporation of the aqueous solvent, close the container carefully after use, spin down liquid and use up small volumes quickly.
  • DMSO: 1 mg/ml solution in DMSO to prevent solvent evaporation. The product should be diluted 1:1000 before use.
  • Solid: 1 mg solid lyophilised in a sterile injection bottle.
  • Drop&Shine:  5 ml ready-to-use product in mounting medium. Ideal for use in sections. Add a some Drop&Shine and mount your slide to analyse biomass or other cellulosic materials within minutes.
contact us for custom options.
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